Publications

Published Work - 2017

New Guidelines for Publication of Manuscripts Describing Development and Application of Targeted Mass Spectrometry Measurements of Peptides and Proteins.

Abbatiello S, Ackermann BL, Borchers C, Bradshaw RA, Carr SA, Chalkley R, Choi M, Deutsch E, Domon B, Hoofnagle AN, Keshishian H, Kuhn E, Liebler DC, MacCoss M, MacLean B, Mani DR, Neubert H, Smith D, Vitek O, Zimmerman L.

Mol Cell Proteomics. 2017

Corrigendum to "Introduction to the HUPO 2015 Special Issue" [J. Proteomics (2016) 1-2].

Borchers CH, Thibault P.

J Proteomics. 2017

Defects in myosin VB are associated with a spectrum of previously undiagnosed low γ-glutamyltransferase cholestasis.

Qiu YL, Gong JY, Feng JY, Wang RX, Han J, Liu T, Lu Y, Li LT, Zhang MH, Sheps JA, Wang NL, Yan YY, Li JQ, Chen L, Borchers CH, Sipos B, Knisely AS, Ling V, Xing QH, Wang JS.

Hepatology. 2017

Metabolomic profiling of prostate cancer by matrix assisted laser desorption/ionization-Fourier transform ion cyclotron resonance mass spectrometry imaging using Matrix Coating Assisted by an Electric Field (MCAEF).

Wang X, Han J, Hardie DB, Yang J, Pan J, Borchers CH.

Biochim Biophys Acta Proteins Proteom. 2017

Characterization and Diagnostic Application of Trypanosoma cruzi Trypomastigote Excreted-Secreted Antigens Shed in Extracellular Vesicles Released from Infected Mammalian Cells.

Bautista-López NL, Ndao M, Camargo FV, Nara T, Annoura T, Hardie DB, Borchers CH, Jardim A.

J Clin Microbiol. 2017

Multiplexed panel of precisely quantified salivary proteins for biomarker assessment.

Percy AJ, Hardie DB, Jardim A, Yang J, Elliott MH, Zhang S, Mohammed Y, Borchers CH.

Proteomics. 2017

Recent advancements in matrix-assisted laser desorption/ionization mass spectrometry imaging.

Baker TC, Han J, Borchers CH.

Curr Opin Biotechnol. 2017

Multiplexed MRM-based assays for the quantitation of proteins in mouse plasma and heart tissue.

Percy AJ, Michaud SA, Jardim A, Sinclair NJ, Zhang S, Mohammed Y, Palmer AL, Hardie DB, Yang J, LeBlanc AM, Borchers CH.

Proteomics. 2017

PeptideTracker: A knowledge base for collecting and storing information on protein concentrations in biological tissues.

Mohammed Y, Bhowmick P, Smith DS, Domanski D, Jackson AM, Michaud SA, Malchow S, Percy AJ, Chambers AG, Palmer A, Zhang S, Sickmann A, Borchers CH.

Proteomics. 2017

Multiplexed targeted proteomic assay to assess coagulation factor concentrations and thrombosis-associated cancer.

Mohammed Y, van Vlijmen BJ, Yang J, Percy AJ, Palmblad M, Borchers CH, Rosendaal FR.

Blood Adv. 2017

Thrombospondin-1 and disease progression in dysferlinopathy.

Urao N, Mirza RE, Corbiere TF, Hollander Z, Borchers CH, Koh TJ.

Hum Mol Genet. 2017

The basic tilted helix bundle domain of the prolyl isomerase FKBP25 is a novel double-stranded RNA binding module.

Dilworth D, Upadhyay SK, Bonnafous P, Edoo AB, Bourbigot S, Pesek-Jardim F, Gudavicius G, Serpa JJ, Petrotchenko EV, Borchers CH, Nelson CJ, Mackereth CD.

Nucleic Acids Res. 2017

Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950-Metabolites in Frozen Human Plasma.

Bowden JA, Heckert A, Ulmer CZ, Jones CM, Koelmel JP, Abdullah L, Ahonen L, Alnouti Y, Armando AM, Asara JM, Bamba T, Barr JR, Bergquist J, Borchers CH, Brandsma J, Breitkopf SB, Cajka T, Cazenave-Gassiot A, Checa A, Cinel MA, Colas RA, Cremers S, et al.

J Lipid Res. 2017

Peptide and Protein Quantification Using Automated Immuno-MALDI (iMALDI).

Li H, Popp R, Frohlich B, Chen MX, Borchers CH.

J Vis Exp. 2017

Immuno-Matrix-Assisted Laser Desorption/Ionization Assays for Quantifying AKT1 and AKT2 in Breast and Colorectal Cancer Cell Lines and Tumors.

Popp R, Li H, LeBlanc A, Mohammed Y, Aguilar-Mahecha A, Chambers AG, Lan C, Poetz O, Basik M, Batist G, Borchers CH.

Anal Chem. 2017

Peptide biomarkers used for the selective breeding of a complex polygenic trait in honey bees.

Guarna MM, Hoover SE, Huxter E, Higo H, Moon KM, Domanski D, Bixby MEF, Melathopoulos AP, Ibrahim A, Peirson M, Desai S, Micholson D, White R, Borchers CH, Currie RW, Pernal SF, Foster LJ.

Sci Rep. 2017

Protein expression changes caused by spaceflight as measured for 18 Russian cosmonauts.

Larina IM, Percy AJ, Yang J, Borchers CH, Nosovsky AM, Grigoriev AI, Nikolaev EN.

Sci Rep. 2017

An online 2D-reversed-phase - Reversed-phase chromatographic method for sensitive and robust plasma protein quantitation.

Richard VR, Domanski D, Percy AJ, Borchers CH.

J Proteomics. 2017

Microfluidic-Mass Spectrometry Interfaces for Translational Proteomics.

Pedde RD, Li H, Borchers CH, Akbari M.

Trends Biotechnol. 2017

Repression of Salmonella Host Cell Invasion by Aromatic Small Molecules from the Human Fecal Metabolome.

Peixoto RJM, Alves ES, Wang M, Ferreira RBR, Granato A, Han J, Gill H, Jacobson K, Lobo LA, Domingues RMCP, Borchers CH, Davies JE, Finlay BB, Antunes LCM.

Appl Environ Microbiol. 2017

Solving protein structures using short-distance cross-linking constraints as a guide for discrete molecular dynamics simulations.

Brodie NI, Popov KI, Petrotchenko EV, Dokholyan NV, Borchers CH.

Sci Adv. 2017

PGCA: An algorithm to link protein groups created from MS/MS data.

Kepplinger D, Takhar M, Sasaki M, Hollander Z, Smith D, McManus B, McMaster WR, Ng RT, Cohen Freue GV.

PLoS One. 2017

Multiplexed MRM-Based Protein Quantitation Using Two Different Stable Isotope-Labeled Peptide Isotopologues for Calibration.

LeBlanc A, Michaud SA, Percy AJ, Hardie DB, Yang J, Sinclair NJ, Proudfoot JI, Pistawka A, Smith DS, Borchers CH.

J Proteome Res. 2017

Current trends in quantitative proteomics - an update.

Li H, Han J, Pan J, Liu T, Parker CE, Borchers CH.

J Mass Spectrom. 2017

Enteric Helminths Promote Salmonella Coinfection by Altering the Intestinal Metabolome.

Reynolds LA, Redpath SA, Yurist-Doutsch S, Gill N, Brown EM, van der Heijden J, Brosschot TP, Han J, Marshall NC, Woodward SE, Valdez Y, Borchers CH, Perona-Wright G, Finlay BB.

J Infect Dis. 2017

A Targeted Proteomics Analysis of Cerebrospinal Fluid after Acute Human Spinal Cord Injury.

Streijger F, Skinnider MA, Rogalski JC, Balshaw R, Shannon CP, Prudova A, Belanger L, Ritchie L, Tsang A, Christie S, Parent S, Mac-Thiong JM, Bailey C, Urquhart J, Ailon T, Paquette S, Boyd M, Street J, Fisher CG, Dvorak MF, Borchers CH, Foster LJ, et al.

J Neurotrauma. 2017

Bead-Extractor Assisted Ready-to-Use Reagent System (BEARS) for Immunoprecipitation Coupled to MALDI-MS.

Li H, Popp R, Chen M, MacNamara EM, Juncker D, Borchers CH.

Anal Chem. 2017